WGA nifH: South Pacific from Ice edge to equator - SRA

SRX7433902: WGA nifH: South Pacific from Ice edge to equator
1 ILLUMINA (Illumina MiSeq) run: 57,562 spots, 26.2M bases, 16.4Mb downloads

Design: The nifH gene (~359-bp), which used as a functional gene indicator of both diazotroph diversity and activity was amplified from environmental DNA extracts using a nested PCR protocol. Two sets of degenerate primers were used to target the region: for the 1st round PRC nifH3 reverse primer (5'-ATRTTRTTNGCNGCRTA-3') and nifH4 forward primer (5'-TTYTAYGGNAARGGNGG -3') are used. Then the 2nd round PCR is conducted with nifH1 forward primer (5'-TGYGAYCCNAARGCNGA-3') and nifH2 reverse primer (5'-ADNGCCATCATYTCNCC-3') (J. Zehr and Turner (2001); J. P. Zehr and McReynolds (1989).

Submitted by: CSIRO

Study: Marine metagenomes Metagenome

PRJNA385736 • SRP114822 • All experiments • All runs

show Abstracthide Abstract

Marine amplicons from Australian marine (benthic and pelagic environments

Sample:

SAMN13671197 • SRS5879111 • All experiments • All runs

Organism: marine metagenome

Library:

Name: 102.100.100/34428

Instrument: Illumina MiSeq

Strategy: WGA